User:Kat: Difference between revisions

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→‎Progress: remove template
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=Progress=
=Progress=
==Weeks before June 16==
* extended ICBO workshop draft
* Reviewed data set from Lucia
==Weeks before May 26 2021==
* Call recap
* Joint food ontology call recap
==Week before 4 May 2021==
{| class="wikitable"
|+ Item counts
|-
!  Item class!! Count
|-
| food items (produce) || 592
|-
| foods that are natural products of some taxon || 483
|-
| foods with FoodOn id || 109
|-
| ingested FCTs || 6
|}
{| class="wikitable"
|+ New Queries
|-
!  Query topic !! Link
|-
| Foods with Smiling Laos food code  || https://tinyurl.com/yjukcrck
|-
| Nutrient properties and related CHEBI ids || https://tinyurl.com/yeocz45v
|}
* Ran smiling Laos bot
* Joint Food Ontology WG meeting 4/28
** http://obofoundry.org/ontology/cdno
* 465,431 items in wikiFCD, available from: https://wikifcd.wiki.opencura.com/wiki/Special:Statistics
* All items in wikiFCD that are in the class "taxon name" have a mapping to their equiv WD item. HMDB ids found on WD items.
* 5/20
==Week before 27 April 2021==
{| class="wikitable"
|+ Item counts
|-
!  Item class!! Count
|-
| food items (produce) || 477
|-
| foods that are natural products of some taxon || 442
|-
| foods with FoodOn id || 109
|-
| ingested FCTs || 5
|}
{| class="wikitable"
|+ New Queries
|-
!  Query topic !! Link
|-
| Food items with Smiling Vietnam food code || https://tinyurl.com/yeexgbyk
|}
* Ran Smiling Vietnam bot
* In progress: manual clean up of common name from the bot run
* Prepped Smiling Laos data
* Drafted Smiling Laos bot
== Week before 20 April 2021==
* Prepared Smiling Vietnam data
* Drafted Smiling Vietnam bot
==Week before 13 April 2021==
{| class="wikitable"
|+ Item counts
|-
!  Item class!! Count
|-
| food items (produce) || 311
|-
| foods that are natural products of some taxon || 442
|-
| foods with FoodOn id || 109
|-
| ingested FCTs || 4
|}
{| class="wikitable"
|+ New Properties
|-
! Property ID !! EN Label !! Link !! datatype
|-
| P315 || SMILING Thailand food code id  ||[[Property:P315]]  || string
|}
{| class="wikitable"
|+ New Queries
|-
!  Query topic !! Link
|-
| Foods with Smiling Thailand food code  || https://tinyurl.com/yg76omv2
|-
| Foods that are natural products of a plant taxon and an image of the plant|| https://tinyurl.com/yfjx9byl
|-
| Foods with Smiling Thailand food code that are natural products of a taxon and a pic of the taxon || https://tinyurl.com/yggsb8p4
|}
* Created new document in Overleaf for workshop paper
* Prepared Smiling Thailand CSV (mapping scientific names to Qids, removing -, nd)
* ran bot for Smiling Thailand
* cleaning up common names
==Week before 6 April 2021==
* Extended Nutrients draft
* ICBO workshop (CEUR template, APC, timeline to publication, audience, quality/depth of feedback)
* Cleaning up Smiling Cambodia data
* Completed Malawi bot run
{| class="wikitable"
|+ New Queries
|-
!  Query topic !! Link
|-
| Foods with Malawi food code  || https://tinyurl.com/yz9j7has
|}
==Week before 1 April 2021==
==Week before 1 April 2021==
{| class="wikitable"
{| class="wikitable"
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!  Item class!! Count
!  Item class!! Count
|-
|-
| food items (produce) || 83
| food items (produce) || 173
|-
|-
| foods that are natural products of some taxon || 316
| foods that are natural products of some taxon || 367
|-
|-
| foods with FoodOn id || 108
| foods with FoodOn id || 109
|-
|-
| ingested FCTs || 3
| ingested FCTs || 3
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|-
|-
| chemical compound|| phosphatidylcholine  || [[Item:Q567992]]
| chemical compound|| phosphatidylcholine  || [[Item:Q567992]]
|-
| chemical compound||  || [[Item:Q567656]]
|-
| chemical compound||  || [[Item:Q567656]]
|-
| chemical compound||  || [[Item:Q567656]]
|}
|}


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!  Query topic !! Link
!  Query topic !! Link
|-
|-
|  ||  
| Foods with Smiling Cambodia food code || https://tinyurl.com/yzf8twmo
|}
|}
* 15, 16, 19, 20 April
* Added new column to Cambodia CSV for Taxon ID
* Added new column to Cambodia CSV for Taxon ID
* Replaced , with . in Cambodia CSV
* Replaced , with . in Cambodia CSV

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