User:Kat: Difference between revisions

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User:Kat (view source)

Revision as of 18:38, 10 October 2022

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→‎Progress: remove template
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=Progress=
=Progress=
==Week before 30 March 20201==
 
 
==Weeks before June 16==
* extended ICBO workshop draft
* Reviewed data set from Lucia
 
==Weeks before May 26 2021==
* Call recap
* Joint food ontology call recap
 
==Week before 4 May 2021==
{| class="wikitable"
{| class="wikitable"
|+ Item counts
|+ Item counts
Line 8: Line 18:
!  Item class!! Count
!  Item class!! Count
|-
|-
| food items (produce) ||  
| food items (produce) || 592
|-
|-
| foods that are natural products of some taxon ||  
| foods that are natural products of some taxon || 483
|-
| foods with FoodOn id || 109
|-
| ingested FCTs || 6
|}
 
{| class="wikitable"
|+ New Queries
|-
!  Query topic !! Link
|-
| Foods with Smiling Laos food code  || https://tinyurl.com/yjukcrck
|-
| Nutrient properties and related CHEBI ids || https://tinyurl.com/yeocz45v
|}
* Ran smiling Laos bot
* Joint Food Ontology WG meeting 4/28
** http://obofoundry.org/ontology/cdno
* 465,431 items in wikiFCD, available from: https://wikifcd.wiki.opencura.com/wiki/Special:Statistics
* All items in wikiFCD that are in the class "taxon name" have a mapping to their equiv WD item. HMDB ids found on WD items.
* 5/20
 
==Week before 27 April 2021==
{| class="wikitable"
|+ Item counts
|-
!  Item class!! Count
|-
| food items (produce) || 477
|-
| foods that are natural products of some taxon || 442
|-
| foods with FoodOn id || 109
|-
| ingested FCTs || 5
|}
 
 
{| class="wikitable"
|+ New Queries
|-
!  Query topic !! Link
|-
| Food items with Smiling Vietnam food code || https://tinyurl.com/yeexgbyk
|}
* Ran Smiling Vietnam bot
* In progress: manual clean up of common name from the bot run
* Prepped Smiling Laos data
* Drafted Smiling Laos bot
 
== Week before 20 April 2021==
* Prepared Smiling Vietnam data
* Drafted Smiling Vietnam bot
 
 
==Week before 13 April 2021==
{| class="wikitable"
|+ Item counts
|-
!  Item class!! Count
|-
| food items (produce) || 311
|-
| foods that are natural products of some taxon || 442
|-
| foods with FoodOn id || 109
|-
| ingested FCTs || 4
|}
|}
{| class="wikitable"
{| class="wikitable"
Line 17: Line 95:
! Property ID !! EN Label !! Link !! datatype
! Property ID !! EN Label !! Link !! datatype
|-
|-
| P313 || Smiling Cambodia food id   ||[[Property:P313]]  || string
| P315 || SMILING Thailand food code id ||[[Property:P315]]  || string
|}
 
 
{| class="wikitable"
|+ New Queries
|-
!  Query topic !! Link
|-
| Foods with Smiling Thailand food code  || https://tinyurl.com/yg76omv2
|-
| Foods that are natural products of a plant taxon and an image of the plant|| https://tinyurl.com/yfjx9byl
|-
| Foods with Smiling Thailand food code that are natural products of a taxon and a pic of the taxon || https://tinyurl.com/yggsb8p4
|}
* Created new document in Overleaf for workshop paper
* Prepared Smiling Thailand CSV (mapping scientific names to Qids, removing -, nd)
* ran bot for Smiling Thailand
* cleaning up common names
 
==Week before 6 April 2021==
* Extended Nutrients draft
* ICBO workshop (CEUR template, APC, timeline to publication, audience, quality/depth of feedback)
* Cleaning up Smiling Cambodia data
* Completed Malawi bot run
 
{| class="wikitable"
|+ New Queries
|-
!  Query topic !! Link
|-
| Foods with Malawi food code  || https://tinyurl.com/yz9j7has
|}
 
==Week before 1 April 2021==
{| class="wikitable"
|+ Item counts
|-
!  Item class!! Count
|-
| food items (produce) || 173
|-
|-
| P296||   ||  || quantity
| foods that are natural products of some taxon || 367
|-
|-
| P297|| || [[Property:P297]] || quantity
| foods with FoodOn id || 109
|-
|-
| P298 ||   || [[Property:P298]] || quantity
| ingested FCTs || 3
|}
{| class="wikitable"
|+ New Properties
|-
|-
| P299 ||    || [[Property:P299]] || quantity
! Property ID !! EN Label !! Link !! datatype
|-
|-
| P300 || || [[Property:P300]] || quantity
| P313 || Smiling Cambodia food id  ||[[Property:P313]]   || string
|-
|-
| P301 ||  || [[Property:P301]] || quantity
| P314 || location sourced from || [[Property:P314]] || item
|}
|}


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| chemical compound  || lutein  || [[Item:Q567984]]
| chemical compound  || lutein  || [[Item:Q567984]]
|-
|-
| chemical compound ||   || [[Item:Q567655]]
| chemical element || boron  || [[Item:Q567985]]
|-
| chemical element|| nickel  || [[Item:Q567986]]
|-
| chemical compound|| biotin  || [[Item:Q567987]]
|-
| chemical compound|| inositol  || [[Item:Q567988]]
|-
| chemical compound|| 5-methyl tetrahydrofolate  || [[Item:Q567989]]
|-
| chemical compound|| choline  || [[Item:Q567990]]
|-
| chemical compound|| phosphocholine  || [[Item:Q567991]]
|-
|-
| chemical compound||   || [[Item:Q567656]]
| chemical compound|| phosphatidylcholine  || [[Item:Q567992]]
|}
|}


Line 57: Line 190:
!  Query topic !! Link
!  Query topic !! Link
|-
|-
|  ||  
| Foods with Smiling Cambodia food code || https://tinyurl.com/yzf8twmo
|}
|}
* 15, 16, 19, 20 April
* Added new column to Cambodia CSV for Taxon ID
* Replaced , with . in Cambodia CSV
* Drafted Smiling Cambodia bot
* Smiling Cambodia bot run complete


==Week before 23 March, 2021==
==Week before 23 March, 2021==
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