Curating data related to food composition.

Progress

Week before 23 Feb, 2021

Item counts
Item class	Count
food items	57
foods that are natural products of some taxon	72

New Properties
Property ID	EN Label	Link	datatype
P305	Phytic acid	Property:P305	quantity
P296			quantity
P297		Property:P297	quantity
P298		Property:P298	quantity
P299		Property:P299	quantity
P300		Property:P300	quantity
P301		Property:P301	quantity

New Queries
Query topic	Link
federated query for chemical compounds that are part of a biological pathway and the works that discuss this	https://tinyurl.com/ybtgwgby
federated query for food items that are a natural product of a taxon in which a metabolite is known to be found showing food names	https://tinyurl.com/ya8e2mp3

FoodEx2 could be a source of the broader categories for foods
No idea if anyone has mapped between FoodEx2 and FDC
Requested FoodEx2 SPARQL endpoint be considered for federation
FoodEx2 record for lettuce: https://data.food.gov.uk/codes/foodtype/id/A05EC
LanguaL has a really awesome thesaurus: https://www.langual.org/langual_thesaurus.asp?termid=B4958&haschildren=False&owner=B1231&openstr=00000_J0107_B1564_B1347_B1140_B1231
LanguaL bot to parse XML and then write new items to wikiFCD
FoodOn builds on LanguaL
Only 7 items from FoodOn in Wikidata so far: https://w.wiki/$2A
Would be great to mass import FoodOn into Wikidata or create Mix'n'Match catalog

Item counts
Item class	Count
food items	53
foods that are natural products of some taxon	67

New Properties
Property ID	EN Label	Link	datatype
P302	sourcing circumstances	Property:P302	item
P303	Wikibooks Cookbook Entry	Property:P303	URL
P304	subject item of this property	Property:P304	item

New Queries
Query topic	Link
Query for packaged food items from the sr_legacy dataset of FDC	https://tinyurl.com/yyp2oz6o
Query for all properties with descriptions and aliases and types	https://tinyurl.com/y35fddfk
Query for chemical elements with International Chemical Identifier	https://tinyurl.com/y68n4cbk
Query for chemical elements with MeSH Tree Code(s)	https://tinyurl.com/y8uwcbmy
Query for food items that are a natural product of some taxon	https://tinyurl.com/ya4p9onl
Graph viz for food items that are a natural product of some taxon	https://tinyurl.com/y9pslqv8

drinkkit
Redesign Main Page
Added ideas for contribution
Report on searching for words like "raw", "fresh", "shoots", "leaves"
Share example Item:Q562624
Share example Item:Q562500
Share example Item:Q209064, but several others listed https://en.wikipedia.org/wiki/Bamboo_shoot
Share example Item:Q567665 look at use of qualifier on P
Share CulinaryDB: Bagler, G. CulinaryDB: https://cosylab.iiitd.edu.in/culinarydb/. Indraprastha Institute

of Information Technology Delhi (IIIT-Delhi) (2017).

How will we help users select between https://tinyurl.com/y66tj86q ?
How will we help users select between 40+ brussels sprouts entries from FDC? (Advanced search for phrase)
Review Item:Q562688 as example of why it might be confusing to combine USDA food items with other fct food items, would be difficult to ensure that people not assume that the common names and the natural product of taxon info from Edible Wild Foods is also valid for the FDC statements
Draft of Introducing WikiFCD for Nutrients
NSF grant: Expanded text for Projects B and C
Great paper calling for projects like ours: https://academic.oup.com/database/article/doi/10.1093/database/baab003/6119904
- figure 1
- figure 3
- comprehensive list of ontologies and knowledge bases
- Their approach is a biomedical ontologist's approach -> we can enhance this approach with Wikidata
- Path forward for NIH funding for personalized medicine
- Potential collaborators
- Leverage the working groups mappings
https://github.com/FoodOntology/joint-food-ontology-wg

New Properties
Property ID	EN Label	Link	datatype
P295	Dehydroascorbic acid	Property:P295	quantity
P296	Vitamin K	Property:P296	quantity
P297	Phenolic acids	Property:P297	quantity
P298	Hydroxibenzoic acids	Property:P298	quantity
P299	Hydroxycinnamic acids	Property:P299	quantity
P300	Flavonols	Property:P300	quantity
P301	Anthocyanins	Property:P301	quantity

New Queries
Query topic	Link
Wikidata query for items with OFF ingredient id and the articles about these foods in all 'pedias with lang label	https://w.wiki/yRo

New Properties
Property ID	EN Label	Link	datatype
P283	editor	Property:P283	string
P284	Oxalic acid	Property:P284	quantity
P285	Fumaric acid	Property:P285	quantity
P286	Phenolics	Property:P286	quantity
P287	Flavonoids	Property:P287	quantity
P289	Carotenoids	Property:P289	quantity
P290	Neoxanthin	Property:P290	quantity
P291	Violaxanthin	Property:P291	quantity
P292	Quinic acid	Property:P292	quantity
P293	Shikimic acid	Property:P293	quantity
P294	Nitrate	Property:P294	quantity

New Items
class	EN Label	Link
food item	fool's watercress	Item:Q567642
food item	borage	Item:Q567643
food item	wild leek	Item:Q567641
food item	shepard's purse	Item:Q567650
unit	cup(s)	Item:Q567645
unit	Tbs	Item:Q567647
unit	tsp	Item:Q567648
dish	granola	Item:Q567644
dish	granola	Item:Q567649
packaged food item	ground flaxseed	Item:Q567646
FCT	Mediterranean Wild Edible Plants	Item:Q567640

New Queries
Query topic	Link
Query for ranked list of items containing most to least DHA (Docosahexaenoic acid) listed in this wikibase	https://tinyurl.com/y56qvvr6