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=Progress= | =Progress= | ||
==Weeks before June 16== | |||
* extended ICBO workshop draft | |||
* Reviewed data set from Lucia | |||
==Weeks before May 26 2021== | |||
* Call recap | |||
* Joint food ontology call recap | |||
==Week before 4 May 2021== | |||
{| class="wikitable" | |||
|+ Item counts | |||
|- | |||
! Item class!! Count | |||
|- | |||
| food items (produce) || 592 | |||
|- | |||
| foods that are natural products of some taxon || 483 | |||
|- | |||
| foods with FoodOn id || 109 | |||
|- | |||
| ingested FCTs || 6 | |||
|} | |||
{| class="wikitable" | |||
|+ New Queries | |||
|- | |||
! Query topic !! Link | |||
|- | |||
| Foods with Smiling Laos food code || https://tinyurl.com/yjukcrck | |||
|- | |||
| Nutrient properties and related CHEBI ids || https://tinyurl.com/yeocz45v | |||
|} | |||
* Ran smiling Laos bot | |||
* Joint Food Ontology WG meeting 4/28 | |||
** http://obofoundry.org/ontology/cdno | |||
* 465,431 items in wikiFCD, available from: https://wikifcd.wiki.opencura.com/wiki/Special:Statistics | |||
* All items in wikiFCD that are in the class "taxon name" have a mapping to their equiv WD item. HMDB ids found on WD items. | |||
* 5/20 | |||
==Week before 27 April 2021== | |||
{| class="wikitable" | |||
|+ Item counts | |||
|- | |||
! Item class!! Count | |||
|- | |||
| food items (produce) || 477 | |||
|- | |||
| foods that are natural products of some taxon || 442 | |||
|- | |||
| foods with FoodOn id || 109 | |||
|- | |||
| ingested FCTs || 5 | |||
|} | |||
{| class="wikitable" | |||
|+ New Queries | |||
|- | |||
! Query topic !! Link | |||
|- | |||
| Food items with Smiling Vietnam food code || https://tinyurl.com/yeexgbyk | |||
|} | |||
* Ran Smiling Vietnam bot | |||
* In progress: manual clean up of common name from the bot run | |||
* Prepped Smiling Laos data | |||
* Drafted Smiling Laos bot | |||
== Week before 20 April 2021== | |||
* Prepared Smiling Vietnam data | |||
* Drafted Smiling Vietnam bot | |||
==Week before 13 April 2021== | |||
{| class="wikitable" | |||
|+ Item counts | |||
|- | |||
! Item class!! Count | |||
|- | |||
| food items (produce) || 311 | |||
|- | |||
| foods that are natural products of some taxon || 442 | |||
|- | |||
| foods with FoodOn id || 109 | |||
|- | |||
| ingested FCTs || 4 | |||
|} | |||
{| class="wikitable" | |||
|+ New Properties | |||
|- | |||
! Property ID !! EN Label !! Link !! datatype | |||
|- | |||
| P315 || SMILING Thailand food code id ||[[Property:P315]] || string | |||
|} | |||
{| class="wikitable" | |||
|+ New Queries | |||
|- | |||
! Query topic !! Link | |||
|- | |||
| Foods with Smiling Thailand food code || https://tinyurl.com/yg76omv2 | |||
|- | |||
| Foods that are natural products of a plant taxon and an image of the plant|| https://tinyurl.com/yfjx9byl | |||
|- | |||
| Foods with Smiling Thailand food code that are natural products of a taxon and a pic of the taxon || https://tinyurl.com/yggsb8p4 | |||
|} | |||
* Created new document in Overleaf for workshop paper | |||
* Prepared Smiling Thailand CSV (mapping scientific names to Qids, removing -, nd) | |||
* ran bot for Smiling Thailand | |||
* cleaning up common names | |||
==Week before 6 April 2021== | |||
* Extended Nutrients draft | |||
* ICBO workshop (CEUR template, APC, timeline to publication, audience, quality/depth of feedback) | |||
* Cleaning up Smiling Cambodia data | |||
* Completed Malawi bot run | |||
{| class="wikitable" | |||
|+ New Queries | |||
|- | |||
! Query topic !! Link | |||
|- | |||
| Foods with Malawi food code || https://tinyurl.com/yz9j7has | |||
|} | |||
==Week before 1 April 2021== | |||
{| class="wikitable" | |||
|+ Item counts | |||
|- | |||
! Item class!! Count | |||
|- | |||
| food items (produce) || 173 | |||
|- | |||
| foods that are natural products of some taxon || 367 | |||
|- | |||
| foods with FoodOn id || 109 | |||
|- | |||
| ingested FCTs || 3 | |||
|} | |||
{| class="wikitable" | |||
|+ New Properties | |||
|- | |||
! Property ID !! EN Label !! Link !! datatype | |||
|- | |||
| P313 || Smiling Cambodia food id ||[[Property:P313]] || string | |||
|- | |||
| P314 || location sourced from || [[Property:P314]] || item | |||
|} | |||
{| class="wikitable" | |||
|+ New Items | |||
|- | |||
! class !! EN Label !! Link | |||
|- | |||
| chemical compound || zeaxanthin || [[Item:Q567982]] | |||
|- | |||
| chemical compound || phytofluene || [[Item:Q567981]] | |||
|- | |||
| chemical compound || phytoene || [[Item:Q567980]] | |||
|- | |||
| chemical compound || calcifediol || [[Item:Q567979]] | |||
|- | |||
| chemical compound || lutein || [[Item:Q567984]] | |||
|- | |||
| chemical element || boron || [[Item:Q567985]] | |||
|- | |||
| chemical element|| nickel || [[Item:Q567986]] | |||
|- | |||
| chemical compound|| biotin || [[Item:Q567987]] | |||
|- | |||
| chemical compound|| inositol || [[Item:Q567988]] | |||
|- | |||
| chemical compound|| 5-methyl tetrahydrofolate || [[Item:Q567989]] | |||
|- | |||
| chemical compound|| choline || [[Item:Q567990]] | |||
|- | |||
| chemical compound|| phosphocholine || [[Item:Q567991]] | |||
|- | |||
| chemical compound|| phosphatidylcholine || [[Item:Q567992]] | |||
|} | |||
{| class="wikitable" | |||
|+ New Queries | |||
|- | |||
! Query topic !! Link | |||
|- | |||
| Foods with Smiling Cambodia food code || https://tinyurl.com/yzf8twmo | |||
|} | |||
* 15, 16, 19, 20 April | |||
* Added new column to Cambodia CSV for Taxon ID | |||
* Replaced , with . in Cambodia CSV | |||
* Drafted Smiling Cambodia bot | |||
* Smiling Cambodia bot run complete | |||
==Week before 23 March, 2021== | ==Week before 23 March, 2021== | ||
{| class="wikitable" | {| class="wikitable" | ||
Line 28: | Line 224: | ||
|- | |- | ||
| P298 || serving size || [[Property:P312]] || quantity | | P298 || serving size || [[Property:P312]] || quantity | ||
|} | |} | ||
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|- | |- | ||
| too many to list ||(Check recent changes)|| | | too many to list ||(Check recent changes)|| | ||
|- | |||
|chemical compound || alpha-cryptoxanthin || [[Item:Q567964]] | |||
|- | |||
|chemical compound || nitrogen || [[Item:Q567965]] | |||
|- | |||
|chemical compound || citric acid || [[Item:Q567967]] | |||
|- | |||
|chemical compound || sorbitol || [[Item:Q567968]] | |||
|- | |||
|chemical compound || xylitol || [[Item:Q567970]] | |||
|- | |||
|chemical compound || ribose || [[Item:Q567971]] | |||
|- | |||
|chemical element || chlorine || [[Item:Q567972]] | |||
|- | |||
|chemical element || sulfur || [[Item:Q567973]] | |||
|- | |||
|chemical element || chromium || [[Item:Q567974]] | |||
|- | |||
|chemical compound || fluoride || [[Item:Q567975]] | |||
|- | |||
|chemical element || iodine || [[Item:Q567976]] | |||
|- | |||
|chemical element || molybdenum || [[Item:Q567977]] | |||
|- | |||
|chemical compound || vitamin D ||[[Item:Q567978]] | |||
|} | |} | ||
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| Federated query for food items with FoodOn id and all metabolites known to Wikidata that are found in the taxon of which the food is a natural product || https://tinyurl.com/yz5seocf | | Federated query for food items with FoodOn id and all metabolites known to Wikidata that are found in the taxon of which the food is a natural product || https://tinyurl.com/yz5seocf | ||
|} | |} | ||
* Extended Nutrients draft | |||
* Created subject items to go with properties for linking props to Wikidata project | |||
* Created a new column "Taxon ID" in Malawi FCT CSV to store the Qids from our Wikibase for each taxon named | * Created a new column "Taxon ID" in Malawi FCT CSV to store the Qids from our Wikibase for each taxon named | ||
* Malawi bot run report | * Malawi bot run report | ||
* Tried to search fatty acids in Chebi | |||
* Tried to search fatty acids in LipidMaps | |||
* FoodOn overview | * FoodOn overview | ||
** https://foodon.org/ | |||
** paper:https://www.nature.com/articles/s41538-018-0032-6 | |||
** contact | |||
** meeting | |||
** higher level groupings | |||
** SPARQL endpoint via OBO | |||
** reuse of all data FoodOn links to: environmental terms from ENVO, agriculture terms from AGRO, plant and animal anatomy terms from UBERON, and PO, organisms from NCBITaxon, relations from RO, and soon nutritional components from CDNO | |||
** mappings to resources that reuse FoodOn: ENVO, CDNO, ONE, ONS, FIDEO, FOBI, ECTO, and DOID | |||
** working group | |||
* Mapped foods to FoodOn ids | * Mapped foods to FoodOn ids | ||
* FoodBasket | |||
* MyFitnessPal | |||
* MyPlate | |||
==Week before 9 March, 2021== | ==Week before 9 March, 2021== |